Transcript: lnc-TPTE-13:2

Basic information

LNCipedia transcript ID: lnc-TPTE-13:2 
LNCipedia gene ID: lnc-TPTE-13
Ensembl Gene ID: ENSG00000279321
Ensembl Transcript ID: ENST00000623559
Location (hg38): chr21:9913361-9914846
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 676 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623559.1
Alternative gene names: ENSG00000279321.1; RP11-555K2.4; AC018692.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.9996 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TPTE-13:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CR381653.1-6:2
4.1 lnc-CR381653.1-6:2
5.0 lnc-CR381653.1-6:2
5.1 lnc-OLIG1-172:2
5.2 lnc-TPTE-13:2