Transcript: lnc-TRABD2B-4:1

Basic information

LNCipedia transcript ID: lnc-TRABD2B-4:1 
LNCipedia gene ID: lnc-TRABD2B-4
Location (hg38): chr1:48101715-48161871
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 645 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000452503; ENST00000452503.1; SKINTL-001; OTTHUMT00000021845.1; NONHSAT139868
Alternative gene names: ENSG00000215889; SKINTL; ENSG00000215889.4; OTTHUMG00000007963.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -268.2279 non-coding 
CPAT coding probability 3.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRABD2B-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-543D5.3.1-4:1
3.1 lnc-RP11-543D5.3.1-4:1
4.0 lnc-RP11-543D5.3.1-4:1
4.1 lnc-RP11-543D5.3.1-4:1
5.0 lnc-RP11-543D5.3.1-4:1
5.1 lnc-STIL-15:1
5.2 lnc-TRABD2B-4:1