Transcript: lnc-TRAF5-3:1

Basic information

LNCipedia transcript ID: lnc-TRAF5-3:1 
LNCipedia gene ID: lnc-TRAF5-3
Ensembl Gene ID: ENSG00000223649
Ensembl Transcript ID: ENST00000417794
Location (hg38): chr1:211492255-211492917
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 491 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417794; ENST00000417794.1; RP11-359E8.3-001; OTTHUMT00000099348.1; NONHSAT009301
Alternative gene names: ENSG00000223649; RP11-359E8.3; ENSG00000223649.1; OTTHUMG00000041463.1; AC105275.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -269.5289 non-coding 
CPAT coding probability 3.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAF5-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRAF5-2:1
3.1 lnc-TRAF5-3:1
4.0 lnc-TRAF5-3:1
4.1 lnc-TRAF5-3:1
5.0 lnc-TRAF5-3:1
5.1 lnc-DTL-20:2
5.2 lnc-TRAF5-3:1