Transcript: lnc-TRAF5-3:2

Basic information

LNCipedia transcript ID: lnc-TRAF5-3:2 
LNCipedia gene ID: lnc-TRAF5-3
Location (hg38): chr1:211492048-211492263
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 216 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: uc_41_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.1308 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAF5-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRAF5-3:2
4.0 lnc-TRAF5-3:2
4.1 lnc-TRAF5-3:2
5.0 lnc-TRAF5-3:2
5.1 lnc-DTL-20:1
5.2 lnc-TRAF5-3:2