Transcript: lnc-TRAP1-1:1

Basic information

LNCipedia transcript ID: lnc-TRAP1-1:1 
LNCipedia gene ID: lnc-TRAP1-1
Ensembl Gene ID: ENSG00000263235
Ensembl Transcript ID: ENST00000570409
Location (hg38): chr16:3650636-3651703
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1068 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570409.1; RP11-461A8.4-001; OTTHUMT00000438774.1; NONHSAT148065
Alternative gene names: ENSG00000263235.1; RP11-461A8.4; OTTHUMG00000177736.1; AC006111.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.3963 non-coding 
CPAT coding probability 19.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRAP1-1:1
4.0 lnc-TRAP1-1:1
4.1 lnc-TRAP1-1:1
5.0 lnc-TRAP1-1:1
5.1 lnc-PKMYT1-44:1
5.2 lnc-TRAP1-1:1