Transcript: lnc-TRAPPC12-2:1

Basic information

LNCipedia transcript ID: lnc-TRAPPC12-2:1 
LNCipedia gene ID: lnc-TRAPPC12-2
Ensembl Gene ID: ENSG00000226649
Ensembl Transcript ID: ENST00000454530
Location (hg38): chr2:3156756-3157797
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 435 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002799; ENST00000454530; ENST00000454530.1; AC019118.4-001; OTTHUMT00000322641.1; NONHSAT068705
Alternative gene names: XLOC_001321; linc-TTC15-1; ENSG00000226649; AC019118.4; ENSG00000226649.1; OTTHUMG00000151435.1; AC019118.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.8598 non-coding 
CPAT coding probability 4.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAPPC12-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRAPPC12-1:1
3.1 lnc-TRAPPC12-2:1
4.0 lnc-TRAPPC12-2:1
4.1 lnc-TRAPPC12-2:1
5.0 lnc-TRAPPC12-2:1
5.1 lnc-SNX17-267:1
5.2 lnc-TRAPPC12-2:1