Transcript: lnc-TRAPPC12-3:3

Basic information

LNCipedia transcript ID: lnc-TRAPPC12-3:3 
LNCipedia gene ID: lnc-TRAPPC12-3
Location (hg38): chr2:2872138-2872757
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 444 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002798; NONHSAT068689
Alternative gene names: XLOC_001320; linc-TTC15-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.6349 non-coding 
CPAT coding probability 6.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAPPC12-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRAPPC12-2:3
3.1 lnc-TRAPPC12-3:3
4.0 lnc-TRAPPC12-3:3
4.1 lnc-TRAPPC12-3:3
5.0 lnc-TRAPPC12-3:3
5.1 lnc-SNX17-270:3
5.2 lnc-TRAPPC12-3:3