Transcript: lnc-TRAPPC2L-2:4

Basic information

LNCipedia transcript ID: lnc-TRAPPC2L-2:4 
LNCipedia gene ID: lnc-TRAPPC2L-2
Ensembl Gene ID: ENSG00000205018
Ensembl Transcript ID: ENST00000378347
Location (hg38): chr16:88939789-88951524
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1812 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000378347.2
Alternative gene names: ENSG00000205018.2; RP11-830F9.6; AC092384.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.6823 non-coding 
CPAT coding probability 99.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRAPPC2L-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-830F9.6.1-2:1
4.1 lnc-RP11-830F9.6.1-2:1
5.0 lnc-RP11-830F9.6.1-2:1
5.1 lnc-SPG7-37:1
5.2 lnc-TRAPPC2L-2:4