Transcript: lnc-TRAPPC6A-2:1

Basic information

LNCipedia transcript ID: lnc-TRAPPC6A-2:1 
LNCipedia gene ID: lnc-TRAPPC6A-2
Location (hg38): chr19:45188290-45188511
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 222 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT066768; FPKM1_group_14904_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.2144 non-coding 
CPAT coding probability 6.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAPPC6A-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRAPPC6A-2:1
4.0 lnc-TRAPPC6A-2:1
4.1 lnc-TRAPPC6A-2:1
5.0 lnc-TRAPPC6A-2:1
5.1 lnc-GPR4-13:1
5.2 lnc-TRAPPC6A-2:1