Transcript: lnc-TRAPPC6B-2:2

Basic information

LNCipedia transcript ID: lnc-TRAPPC6B-2:2 
LNCipedia gene ID: lnc-TRAPPC6B-2
Ensembl Gene ID: ENSG00000258940
Ensembl Transcript ID: ENST00000605298
RefSeq ID: NR_038935
Location (hg38): chr14:39265703-39267061
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1359 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT036527; NR_038935; ENST00000605298.1; NR_038935.1
Alternative gene names: ENSG00000258940.2; RP11-407N17.5; AL132639.2; LOC100288846


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.4914 non-coding 
CPAT coding probability 18.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRAPPC6B-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRAPPC6B-2:2
4.0 lnc-TRAPPC6B-2:2
4.1 lnc-TRAPPC6B-2:2
5.0 lnc-TRAPPC6B-2:2
5.1 lnc-EFS-194:4
5.2 lnc-TRAPPC6B-2:2