Transcript: lnc-TRDMT1-5:1

Basic information

LNCipedia transcript ID: lnc-TRDMT1-5:1 
LNCipedia gene ID: lnc-TRDMT1-5
Ensembl Gene ID: ENSG00000234961
Ensembl Transcript ID: ENST00000456355
Location (hg38): chr10:17233325-17234833
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 706 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456355.1; RP11-124N14.3-001; OTTHUMT00000047013.1; NONHSAT011612
Alternative gene names: ENSG00000234961.1; RP11-124N14.3; OTTHUMG00000017742.1; AL133415.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -284.4467 non-coding 
CPAT coding probability 41.71% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRDMT1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRDMT1-2:1
4.0 lnc-TRDMT1-5:1
4.1 lnc-TRDMT1-5:1
5.0 lnc-TRDMT1-5:1
5.1 lnc-MPP7-126:3
5.2 lnc-TRDMT1-5:1