Transcript: lnc-TRIB1-1:1

Basic information

LNCipedia transcript ID: lnc-TRIB1-1:1 
LNCipedia gene ID: lnc-TRIB1-1
Ensembl Gene ID: ENSG00000253111
Ensembl Transcript ID: ENST00000521991
Location (hg38): chr8:125522775-125530486
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 785 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521991; ENST00000521991.1; RP11-136O12.2-002; OTTHUMT00000381435.1; NONHSAT128975; FPKM1_group_32135_transcript_1
Alternative gene names: ENSG00000253111; RP11-136O12.2; ENSG00000253111.1; OTTHUMG00000165008.1; AC091114.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.4633 non-coding 
CPAT coding probability 3.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIB1-1:1 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIB1-2:1
3.1 lnc-TRIB1-1:1
4.0 lnc-TRIB1-1:1
4.1 lnc-TRIB1-1:1
5.0 lnc-TRIB1-1:1
5.1 lnc-NSMCE2-3:3
5.2 lnc-TRIB1-1:1