Transcript: lnc-TRIB2-6:1

Basic information

LNCipedia transcript ID: lnc-TRIB2-6:1 
LNCipedia gene ID: lnc-TRIB2-6
Ensembl Gene ID: ENSG00000229370
Ensembl Transcript ID: ENST00000434509
Location (hg38): chr2:13537673-13609168
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434509; ENST00000434509.1; AC092635.1-001; OTTHUMT00000323609.1; NONHSAT069253
Alternative gene names: ENSG00000229370; AC092635.1; ENSG00000229370.1; OTTHUMG00000151714.1; AC073062.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.3713 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIB2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIB2-5:1
3.1 lnc-TRIB2-6:1
4.0 lnc-TRIB2-6:1
4.1 lnc-TRIB2-6:1
5.0 lnc-TRIB2-6:1
5.1 lnc-SNX17-156:1
5.2 lnc-TRIB2-6:1