Transcript: lnc-TRIM16-1:9

Basic information

LNCipedia transcript ID: lnc-TRIM16-1:9 
LNCipedia gene ID: lnc-TRIM16-1
Location (hg38): chr17:15677631-15684298
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 516 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT145845
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.7695 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM16-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-385D13.1.1-1:5
4.0 lnc-TRIM16-1:9
4.1 lnc-TRIM16-1:9
5.0 lnc-TRIM16-1:9
5.1 lnc-COPS3-68:5
5.2 lnc-TRIM16-1:9