Transcript: lnc-TRIM26-2:3

Basic information

LNCipedia transcript ID: lnc-TRIM26-2:3 
LNCipedia gene ID: lnc-TRIM26-2
Location (hg38): chr6:30291006-30326851
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2906 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000412685; ENST00000412685.1; HCG18-001; OTTHUMT00000076242.3
Alternative gene names: ENSG00000231074; HCG18; ENSG00000231074.2; OTTHUMG00000031138.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -33.9887 non-coding 
CPAT coding probability 5.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRIM26-2:3 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIM26-1:3
3.1 lnc-TRIM26-2:3
4.0 lnc-TRIM26-2:3
4.1 lnc-TRIM26-2:3
5.0 lnc-TRIM26-2:3
5.1 lnc-SFTA2-26:19
5.2 lnc-TRIM26-2:3