Transcript: lnc-TRIM26-2:44

Basic information

LNCipedia transcript ID: lnc-TRIM26-2:44 
LNCipedia gene ID: lnc-TRIM26-2
Location (hg38): chr6:30291006-30326856
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4568 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000231074.4|ENST00000426882.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -33.9887 non-coding 
CPAT coding probability 4.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM26-2:44 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRIM26-2:44
5.0 lnc-TRIM26-2:44
5.1 lnc-SFTA2-26:17
5.2 lnc-TRIM26-2:44