Transcript: lnc-TRIM38-2:11

Basic information

LNCipedia transcript ID: lnc-TRIM38-2:11 
LNCipedia gene ID: lnc-TRIM38-2
Location (hg38): chr6:25997656-25999518
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 915 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012438; NONHSAT108201
Alternative gene names: XLOC_005208; linc-HIST1H3A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.5373 non-coding 
CPAT coding probability 1.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM38-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIM38-1:4
3.1 lnc-TRIM38-1:4
4.0 lnc-TRIM38-1:4
4.1 lnc-HIST1H2BH-2:12
5.0 lnc-HIST1H2BH-2:12
5.1 lnc-CARMIL1-26:12
5.2 lnc-TRIM38-2:11