Transcript: lnc-TRIM38-2:4

Basic information

LNCipedia transcript ID: lnc-TRIM38-2:4 
LNCipedia gene ID: lnc-TRIM38-2
Location (hg38): chr6:25992667-26001775
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4125 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000272462.2|ENST00000606723.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 17.4506 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM38-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-HIST1H2BH-2:3
5.0 lnc-HIST1H2BH-2:3
5.1 lnc-CARMIL1-26:3
5.2 lnc-TRIM38-2:4