Transcript: lnc-TRIM38-2:5

Basic information

LNCipedia transcript ID: lnc-TRIM38-2:5 
LNCipedia gene ID: lnc-TRIM38-2
Location (hg38): chr6:25992699-26000489
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1859 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011742; NONHSAT108197
Alternative gene names: XLOC_005208; linc-HIST1H3A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.4506 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM38-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIM38-1:1
3.1 lnc-TRIM38-1:1
4.0 lnc-TRIM38-1:1
4.1 lnc-HIST1H2BH-2:4
5.0 lnc-HIST1H2BH-2:4
5.1 lnc-CARMIL1-26:4
5.2 lnc-TRIM38-2:5