Transcript: lnc-TRIM38-6:1

Basic information

LNCipedia transcript ID: lnc-TRIM38-6:1 
LNCipedia gene ID: lnc-TRIM38-6
Location (hg38): chr6:25937334-25937801
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 336 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011741; NONHSAT108194
Alternative gene names: XLOC_005207; linc-TRIM38


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.0802 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM38-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIM38-2:1
3.1 lnc-TRIM38-2:1
4.0 lnc-TRIM38-2:1
4.1 lnc-TRIM38-2:1
5.0 lnc-TRIM38-2:1
5.1 lnc-CARMIL1-13:1
5.2 lnc-TRIM38-6:1