Transcript: lnc-TRIM43B-1:3

Basic information

LNCipedia transcript ID: lnc-TRIM43B-1:3 
LNCipedia gene ID: lnc-TRIM43B-1
Ensembl Gene ID: ENSG00000272913
Ensembl Transcript ID: ENST00000609975
Location (hg38): chr2:95525109-95526702
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1594 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609975.1
Alternative gene names: ENSG00000272913.1; RP11-440D17.3; AC009237.14


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 67.6272 coding 
CPAT coding probability 51.61% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRIM43B-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD36C-10:1
4.0 lnc-ANKRD36C-10:1
4.1 lnc-ANKRD36C-10:1
5.0 lnc-ANKRD36C-10:1
5.1 lnc-ZNF514-26:3
5.2 lnc-TRIM43B-1:3