Transcript: lnc-TRIM44-2:1

Basic information

LNCipedia transcript ID: lnc-TRIM44-2:1 
LNCipedia gene ID: lnc-TRIM44-2
Location (hg38): chr11:35814332-35818007
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3676 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000570295.1; RP11-698N11.4-001; OTTHUMT00000422468.1; NONHSAT018796
Alternative gene names: ENSG00000261355.1; RP11-698N11.4; OTTHUMG00000173207.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.1706 non-coding 
CPAT coding probability 5.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM44-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM44-2:1
4.0 lnc-TRIM44-2:1
4.1 lnc-TRIM44-2:1
5.0 lnc-TRIM44-2:1
5.1 lnc-CAPRIN1-30:1
5.2 lnc-TRIM44-2:1