Transcript: lnc-TRIM45-1:16

Basic information

LNCipedia transcript ID: lnc-TRIM45-1:16 
LNCipedia gene ID: lnc-TRIM45-1
Location (hg38): chr1:117025482-117059495
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1819 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236137.1|ENST00000445523.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -99.6964 non-coding 
CPAT coding probability 1.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM45-1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRIM45-1:16
5.0 lnc-TRIM45-1:16
5.1 lnc-CD58-13:13
5.2 lnc-TRIM45-1:16