Transcript: lnc-TRIM56-1:1

Basic information

LNCipedia transcript ID: lnc-TRIM56-1:1 
LNCipedia gene ID: lnc-TRIM56-1
Location (hg38): chr7:101094047-101097967
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3921 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000564977.1; RP11-395B7.7-001; OTTHUMT00000347221.2; NONHSAT122447
Alternative gene names: ENSG00000260336.1; RP11-395B7.7; OTTHUMG00000157039.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.9616 non-coding 
CPAT coding probability 6.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIM56-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM56-1:1
4.0 lnc-TRIM56-1:1
4.1 lnc-TRIM56-1:1
5.0 lnc-TRIM56-1:1
5.1 lnc-TRIM56-1:1
5.2 lnc-TRIM56-1:1