Transcript: lnc-TRIP13-1:2

Basic information

LNCipedia transcript ID: lnc-TRIP13-1:2 
LNCipedia gene ID: lnc-TRIP13-1
Ensembl Gene ID: ENSG00000248949
Ensembl Transcript ID: ENST00000507989
Location (hg38): chr5:946315-956520
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 559 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009323; ENST00000507989; ENST00000507989.1; RP11-661C8.2-001; OTTHUMT00000367448.1; NONHSAT099945
Alternative gene names: XLOC_004242; linc-NKD2; ENSG00000248949; RP11-661C8.2; ENSG00000248949.1; OTTHUMG00000162130.1; AC122719.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.5993 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIP13-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-661C8.3.1-1:1
3.1 lnc-RP11-661C8.3.1-1:1
4.0 lnc-RP11-661C8.3.1-1:1
4.1 lnc-RP11-661C8.3.1-1:1
5.0 lnc-RP11-661C8.3.1-1:1
5.1 lnc-CARD6-385:1
5.2 lnc-TRIP13-1:2