Transcript: lnc-TRMT112-1:1

Basic information

LNCipedia transcript ID: lnc-TRMT112-1:1 
LNCipedia gene ID: lnc-TRMT112-1
Ensembl Gene ID: ENSG00000236935
Ensembl Transcript ID: ENST00000447028
Location (hg38): chr11:64325050-64329504
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 672 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447028.1; AP003774.1-001; OTTHUMT00000104844.1; NONHSAT021986
Alternative gene names: ENSG00000236935.1; AP003774.1; OTTHUMG00000045125.1; AP003774.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.0662 non-coding 
CPAT coding probability 4.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRMT112-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRMT112-1:1
4.0 lnc-TRMT112-1:1
4.1 lnc-TRMT112-1:1
5.0 lnc-TRMT112-1:1
5.1 lnc-LTBP3-78:1
5.2 lnc-TRMT112-1:1