Transcript: lnc-TRMT112-2:1

Basic information

LNCipedia transcript ID: lnc-TRMT112-2:1 
LNCipedia gene ID: lnc-TRMT112-2
Ensembl Gene ID: ENSG00000231680
Ensembl Transcript ID: ENST00000457725
Location (hg38): chr11:64394342-64395831
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 985 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019171; ENST00000457725; ENST00000457725.1; AP003774.6-001; OTTHUMT00000315945.1; NONHSAT021992
Alternative gene names: XLOC_009463; linc-TRMT112-1; ENSG00000231680; AP003774.6; ENSG00000231680.1; OTTHUMG00000150041.1; AP003774.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.5078 non-coding 
CPAT coding probability 15.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRMT112-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRMT112-1:1
3.1 lnc-TRMT112-2:1
4.0 lnc-TRMT112-2:1
4.1 lnc-TRMT112-2:1
5.0 lnc-TRMT112-2:1
5.1 lnc-LTBP3-77:1
5.2 lnc-TRMT112-2:1