Transcript: lnc-TRMT44-1:1

Basic information

LNCipedia transcript ID: lnc-TRMT44-1:1 
LNCipedia gene ID: lnc-TRMT44-1
Ensembl Gene ID: ENSG00000205959
Ensembl Transcript ID: ENST00000528132
Location (hg38): chr4:8482270-8509195
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 568 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528132.1; RP11-689P11.2-002; OTTHUMT00000387301.1; NONHSAT095104
Alternative gene names: ENSG00000205959.3; RP11-689P11.2; OTTHUMG00000160092.3; AC105345.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.2296 non-coding 
CPAT coding probability 10.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRMT44-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-METTL19-1:1
4.0 lnc-METTL19-1:1
4.1 lnc-METTL19-1:1
5.0 lnc-METTL19-1:1
5.1 lnc-GPR78-3:1
5.2 lnc-TRMT44-1:1