Transcript: lnc-TRMT61B-1:4

Basic information

LNCipedia transcript ID: lnc-TRMT61B-1:4 
LNCipedia gene ID: lnc-TRMT61B-1
Ensembl Gene ID: ENSG00000226833
Ensembl Transcript ID: ENST00000444501
Location (hg38): chr2:28722440-28736109
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 723 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003244; ENST00000444501.1; AC097724.3-003; OTTHUMT00000324852.1; NONHSAT069844
Alternative gene names: XLOC_002035; linc-RBKS-1; ENSG00000226833.1; AC097724.3; OTTHUMG00000152012.1; ENSG00000226833.5; AC092164.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.2625 non-coding 
CPAT coding probability 1.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRMT61B-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRMT61B-1:4
3.1 lnc-TRMT61B-1:4
4.0 lnc-TRMT61B-1:4
4.1 lnc-TRMT61B-1:4
5.0 lnc-TRMT61B-1:4
5.1 lnc-RBKS-42:15
5.2 lnc-TRMT61B-1:4