Transcript: lnc-TRMT61B-1:5

Basic information

LNCipedia transcript ID: lnc-TRMT61B-1:5 
LNCipedia gene ID: lnc-TRMT61B-1
Location (hg38): chr2:28709069-28731949
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004187; NONHSAT069841
Alternative gene names: XLOC_002035; linc-RBKS-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.7819 non-coding 
CPAT coding probability 9.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRMT61B-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRMT61B-1:5
3.1 lnc-TRMT61B-1:5
4.0 lnc-TRMT61B-1:5
4.1 lnc-TRMT61B-1:5
5.0 lnc-TRMT61B-1:5
5.1 lnc-RBKS-42:17
5.2 lnc-TRMT61B-1:5