Transcript: lnc-TRPM1-1:1

Basic information

LNCipedia transcript ID: lnc-TRPM1-1:1 
LNCipedia gene ID: lnc-TRPM1-1
Location (hg38): chr15:31222837-31230838
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 954 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000558388.1; RP11-16E12.2-001; OTTHUMT00000417394.1
Alternative gene names: ENSG00000259772.1; RP11-16E12.2; OTTHUMG00000172223.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.7755 non-coding 
CPAT coding probability 35.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRPM1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPM1-1:1
4.0 lnc-TRPM1-1:1
4.1 lnc-TRPM1-1:1
5.0 lnc-TRPM1-1:1
5.1 lnc-OTUD7A-1:6
5.2 lnc-TRPM1-1:1