Transcript: lnc-TRPM1-1:11

Basic information

LNCipedia transcript ID: lnc-TRPM1-1:11 
LNCipedia gene ID: lnc-TRPM1-1
Location (hg38): chr15:31222754-31229306
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 507 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024051; NONHSAT041436
Alternative gene names: XLOC_011413; linc-TRPM1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.3275 non-coding 
CPAT coding probability 3.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRPM1-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRPM1-1:5
3.1 lnc-TRPM1-1:11
4.0 lnc-TRPM1-1:11
4.1 lnc-TRPM1-1:11
5.0 lnc-TRPM1-1:11
5.1 lnc-OTUD7A-1:23
5.2 lnc-TRPM1-1:11