Transcript: lnc-TRPM1-1:12

Basic information

LNCipedia transcript ID: lnc-TRPM1-1:12 
LNCipedia gene ID: lnc-TRPM1-1
Location (hg38): chr15:31222754-31229306
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 715 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024054; NONHSAT041435
Alternative gene names: XLOC_011413; linc-TRPM1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.6049 non-coding 
CPAT coding probability 26.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRPM1-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRPM1-1:6
3.1 lnc-TRPM1-1:12
4.0 lnc-TRPM1-1:12
4.1 lnc-TRPM1-1:12
5.0 lnc-TRPM1-1:12
5.1 lnc-OTUD7A-1:24
5.2 lnc-TRPM1-1:12