Transcript: lnc-TRPM1-1:13

Basic information

LNCipedia transcript ID: lnc-TRPM1-1:13 
LNCipedia gene ID: lnc-TRPM1-1
Location (hg38): chr15:31222725-31229305
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 746 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024050; NONHSAT041432
Alternative gene names: XLOC_011413; linc-TRPM1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.6049 non-coding 
CPAT coding probability 23.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRPM1-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRPM1-1:8
3.1 lnc-TRPM1-1:13
4.0 lnc-TRPM1-1:13
4.1 lnc-TRPM1-1:13
5.0 lnc-TRPM1-1:13
5.1 lnc-OTUD7A-1:26
5.2 lnc-TRPM1-1:13