Transcript: lnc-TRPM1-1:14

Basic information

LNCipedia transcript ID: lnc-TRPM1-1:14 
LNCipedia gene ID: lnc-TRPM1-1
Location (hg38): chr15:31221839-31224144
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2172 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023601; NONHSAT041429
Alternative gene names: XLOC_011413; linc-TRPM1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.6049 non-coding 
CPAT coding probability 2.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRPM1-1:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRPM1-1:9
3.1 lnc-TRPM1-1:14
4.0 lnc-TRPM1-1:14
4.1 lnc-TRPM1-1:14
5.0 lnc-TRPM1-1:14
5.1 lnc-OTUD7A-1:27
5.2 lnc-TRPM1-1:14