Transcript: lnc-TRPM1-1:25

Basic information

LNCipedia transcript ID: lnc-TRPM1-1:25 
LNCipedia gene ID: lnc-TRPM1-1
Location (hg38): chr15:31221244-31229382
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2301 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259772.2|HBMT00000496516.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -14.1836 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRPM1-1:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRPM1-1:25
5.0 lnc-TRPM1-1:25
5.1 lnc-OTUD7A-1:16
5.2 lnc-TRPM1-1:25