Transcript: lnc-TRPM1-1:3

Basic information

LNCipedia transcript ID: lnc-TRPM1-1:3 
LNCipedia gene ID: lnc-TRPM1-1
Ensembl Gene ID: ENSG00000259772
Ensembl Transcript ID: ENST00000559094
Location (hg38): chr15:31222796-31230833
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 745 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559094.1; RP11-16E12.2-002; OTTHUMT00000417393.1; NONHSAT041440
Alternative gene names: ENSG00000259772.1; RP11-16E12.2; OTTHUMG00000172223.1; ENSG00000259772.2; ENSG00000259772.6; AC012236.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.3275 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRPM1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPM1-1:3
4.0 lnc-TRPM1-1:3
4.1 lnc-TRPM1-1:3
5.0 lnc-TRPM1-1:3
5.1 lnc-OTUD7A-1:9
5.2 lnc-TRPM1-1:3