Transcript: lnc-TRPT1-1:2

Basic information

LNCipedia transcript ID: lnc-TRPT1-1:2 
LNCipedia gene ID: lnc-TRPT1-1
Ensembl Gene ID: ENSG00000256116
Ensembl Transcript ID: ENST00000534988
Location (hg38): chr11:64229214-64234292
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 923 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534988.1; RP11-783K16.14-002; OTTHUMT00000397332.1; NONHSAT021960
Alternative gene names: ENSG00000256116.1; RP11-783K16.14; OTTHUMG00000167845.2; AP001453.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -255.8051 non-coding 
CPAT coding probability 46.52% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRPT1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPT1-1:2
4.0 lnc-TRPT1-1:2
4.1 lnc-TRPT1-1:2
5.0 lnc-TRPT1-1:2
5.1 lnc-LTBP3-83:2
5.2 lnc-TRPT1-1:2