Transcript: lnc-TRPT1-2:1

Basic information

LNCipedia transcript ID: lnc-TRPT1-2:1 
LNCipedia gene ID: lnc-TRPT1-2
Ensembl Gene ID: ENSG00000256341
Ensembl Transcript ID: ENST00000543817
Location (hg38): chr11:64118272-64119210
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 575 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543817.1; RP11-21A7A.3-001; OTTHUMT00000396929.1; NONHSAT021939
Alternative gene names: ENSG00000256341.1; RP11-21A7A.3; OTTHUMG00000167910.1; AP006333.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.9594 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRPT1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPT1-2:1
4.0 lnc-TRPT1-2:1
4.1 lnc-TRPT1-2:1
5.0 lnc-TRPT1-2:1
5.1 lnc-LTBP3-87:1
5.2 lnc-TRPT1-2:1