Transcript: lnc-TRPV3-1:1

Basic information

LNCipedia transcript ID: lnc-TRPV3-1:1 
LNCipedia gene ID: lnc-TRPV3-1
Ensembl Gene ID: ENSG00000263338
Ensembl Transcript ID: ENST00000573568
Location (hg38): chr17:3577955-3578853
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 560 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573568.1; RP11-235E17.3-001; OTTHUMT00000438263.1; NONHSAT145008
Alternative gene names: ENSG00000263338.1; RP11-235E17.3; OTTHUMG00000177651.1; AC027796.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.1619 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRPV3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPV3-1:1
4.0 lnc-TRPV3-1:1
4.1 lnc-TRPV3-1:1
5.0 lnc-TRPV3-1:1
5.1 lnc-RPH3AL-88:1
5.2 lnc-TRPV3-1:1