Transcript: lnc-TSC22D1-5:4

Basic information

LNCipedia transcript ID: lnc-TSC22D1-5:4 
LNCipedia gene ID: lnc-TSC22D1-5
Location (hg38): chr13:44689135-44715754
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 241 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000016989.1|ENCT00000118499.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -330.3809 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSC22D1-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TSC22D1-5:4
5.0 lnc-TSC22D1-5:4
5.1 lnc-CCDC169-102:4
5.2 lnc-TSC22D1-5:4