Transcript: lnc-TSEN2-1:2

Basic information

LNCipedia transcript ID: lnc-TSEN2-1:2 
LNCipedia gene ID: lnc-TSEN2-1
Location (hg38): chr3:12473713-12476523
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 520 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005947; NONHSAT088011
Alternative gene names: XLOC_002577; linc-TSEN2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.4121 non-coding 
CPAT coding probability 18.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSEN2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSEN2-1:2
3.1 lnc-TSEN2-1:2
4.0 lnc-TSEN2-1:2
4.1 lnc-TSEN2-1:2
5.0 lnc-TSEN2-1:2
5.1 lnc-TSEN2-1:2
5.2 lnc-TSEN2-1:2