Transcript: lnc-TSFM-2:1

Basic information

LNCipedia transcript ID: lnc-TSFM-2:1 
LNCipedia gene ID: lnc-TSFM-2
Ensembl Gene ID: ENSG00000269903
Ensembl Transcript ID: ENST00000602327
Location (hg38): chr12:57814494-57814926
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 433 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT028976; ENST00000602327.1
Alternative gene names: ENSG00000269903.1; RP11-571M6.18; AC025165.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.4464 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSFM-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSFM-2:1
4.0 lnc-TSFM-2:1
4.1 lnc-TSFM-2:1
5.0 lnc-TSFM-2:1
5.1 lnc-CDK2-77:1
5.2 lnc-TSFM-2:1