Transcript: lnc-TSHR-4:1

Basic information

LNCipedia transcript ID: lnc-TSHR-4:1 
LNCipedia gene ID: lnc-TSHR-4
Ensembl Gene ID: ENSG00000259035
Ensembl Transcript ID: ENST00000554814
Location (hg38): chr14:81741002-82030349
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 559 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554814; ENST00000554814.1; RP11-666E17.1-001; OTTHUMT00000413276.1; NONHSAT038075
Alternative gene names: ENSG00000259035; RP11-666E17.1; ENSG00000259035.1; OTTHUMG00000171401.1; AL355838.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.0422 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSHR-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSHR-4:1
3.1 lnc-TSHR-4:1
4.0 lnc-TSHR-4:1
4.1 lnc-TSHR-4:1
5.0 lnc-TSHR-4:1
5.1 lnc-FLRT2-12:1
5.2 lnc-TSHR-4:1