Transcript: lnc-TSHZ1-4:5

Basic information

LNCipedia transcript ID: lnc-TSHZ1-4:5 
LNCipedia gene ID: lnc-TSHZ1-4
Location (hg38): chr18:75455674-75465548
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2373 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000036596.1|FTMT27100011586.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -57.5315 non-coding 
CPAT coding probability 3.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSHZ1-4:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TSHZ1-4:5
5.0 lnc-TSHZ1-4:5
5.1 lnc-KCNG2-41:4
5.2 lnc-TSHZ1-4:5