Transcript: lnc-TSHZ1-7:1

Basic information

LNCipedia transcript ID: lnc-TSHZ1-7:1 
LNCipedia gene ID: lnc-TSHZ1-7
Ensembl Gene ID: ENSG00000276993
Ensembl Transcript ID: ENST00000612669
Location (hg38): chr18:75387056-75387596
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000612669.1
Alternative gene names: ENSG00000276993.1; RP11-321M21.4; AC116003.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -156.9565 non-coding 
CPAT coding probability 11.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSHZ1-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TSHZ1-7:1
4.1 lnc-TSHZ1-7:1
5.0 lnc-TSHZ1-7:1
5.1 lnc-KCNG2-42:1
5.2 lnc-TSHZ1-7:1