Transcript: lnc-TSHZ2-1:1

Basic information

LNCipedia transcript ID: lnc-TSHZ2-1:1 
LNCipedia gene ID: lnc-TSHZ2-1
RefSeq ID: NR_110051
Location (hg38): chr20:53552770-53575308
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1947 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000424252; ENST00000424252.1; RP4-724E16.2-001; OTTHUMT00000079759.2; NONHSAT080396; NR_110051; NR_110051.1
Alternative gene names: ENSG00000197670; RP4-724E16.2; ENSG00000197670.5; OTTHUMG00000032765.2; LOC101927770


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.8287 non-coding 
CPAT coding probability 46.30% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TSHZ2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSHZ2-1:1
3.1 lnc-TSHZ2-1:1
4.0 lnc-TSHZ2-1:1
4.1 lnc-TSHZ2-1:1
5.0 lnc-TSHZ2-1:1
5.1 lnc-MC3R-40:1
5.2 lnc-TSHZ2-1:1