Transcript: lnc-TSKU-1:1

Basic information

LNCipedia transcript ID: lnc-TSKU-1:1 
LNCipedia gene ID: lnc-TSKU-1
Ensembl Gene ID: ENSG00000261578
Ensembl Transcript ID: ENST00000566747
Location (hg38): chr11:76800364-76804555
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4192 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566747.1; RP11-21L23.2-001; OTTHUMT00000382875.1; NONHSAT023192
Alternative gene names: ENSG00000261578.1; RP11-21L23.2; OTTHUMG00000165240.1; AP003119.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.1169 non-coding 
CPAT coding probability 7.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSKU-1:1 no no no no

Available literature

  1. Zhou (2015), A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer., J Transl Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSKU-1:1
4.0 lnc-TSKU-1:1
4.1 lnc-TSKU-1:1
5.0 lnc-TSKU-1:1
5.1 lnc-DDIAS-64:2
5.2 lnc-TSKU-1:1