Transcript: lnc-TSKU-1:3

Basic information

LNCipedia transcript ID: lnc-TSKU-1:3 
LNCipedia gene ID: lnc-TSKU-1
Location (hg38): chr11:76800281-76804506
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4226 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA247:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -10.1169 non-coding 
CPAT coding probability 7.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSKU-1:3 no no no no

Available literature

  1. Zhou (2015), A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer., J Transl Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TSKU-1:3
4.1 lnc-TSKU-1:3
5.0 lnc-TSKU-1:3
5.1 lnc-DDIAS-64:1
5.2 lnc-TSKU-1:3