Transcript: lnc-TSPAN1-1:1

Basic information

LNCipedia transcript ID: lnc-TSPAN1-1:1 
LNCipedia gene ID: lnc-TSPAN1-1
RefSeq ID: NR_125987
Location (hg38): chr1:46133371-46139081
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 359 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000452785.1; RP4-533D7.5-001; OTTHUMT00000022173.1; NONHSAT002986; NR_125987.1
Alternative gene names: ENSG00000227857.1; RP4-533D7.5; OTTHUMG00000008098.1; LOC101929626


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.973 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSPAN1-1:1
4.0 lnc-TSPAN1-1:1
4.1 lnc-TSPAN1-1:1
5.0 lnc-TSPAN1-1:1
5.1 lnc-LURAP1-2:5
5.2 lnc-TSPAN1-1:1